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Livres
Articles (33)
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Counting Permutations with Two Displacement Values: 11281 [2007, 259]

Max Alekseyev and John Henry Steelman

Journal:

American Mathematical Monthly

Année:

2009

Langue:

english

Fichier:

PDF, 234 KB

english, 2009

Colored de Bruijn Graphs and the Genome Halving Problem

Alekseyev, Max, Pevzner, Pavel

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2007

Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss

Avdeyev, Pavel, Jiang, Shuai, Aganezov, Sergey, Hu, Fei, Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2016

Multi-break rearrangements and chromosomal evolution

Max A. Alekseyev, Pavel A. Pevzner

Journal:

Theoretical Computer Science

Année:

2008

Langue:

english

Fichier:

PDF, 436 KB

english, 2008

Whole Genome Duplications and Contracted Breakpoint Graphs

Alekseyev, Max A., Pevzner, Pavel A.

Journal:

SIAM Journal on Computing

Année:

2007

Langue:

english

Fichier:

PDF, 239 KB

english, 2007

Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly

Pham, Son K., Antipov, Dmitry, Sirotkin, Alexander, Tesler, Glenn, Pevzner, Pavel A., Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 554 KB

english, 2013

On pairwise distances and median score of three genomes under DCJ

Sergey Aganezov Jr, Max A Alekseyev

Journal:

BMC Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 631 KB

english, 2012

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Sergey I Nikolenko, Anton I Korobeynikov, Max A Alekseyev

Journal:

BMC Genomics

Année:

2013

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2013

Comparative genomics reveals birth and death of fragile regions in mammalian evolution

Max A Alekseyev, Pavel A Pevzner

Journal:

Genome Biology

Année:

2010

Langue:

english

Fichier:

PDF, 619 KB

english, 2010

Phylogenetic analysis of genome rearrangements among five mammalian orders

Luo, Haiwei, Arndt, William, Zhang, Yiwei, Shi, Guanqun, Alekseyev, Max A., Tang, Jijun, Hughes, Austin L., Friedman, Robert

Journal:

Molecular Phylogenetics and Evolution

Année:

2012

Langue:

english

Fichier:

PDF, 779 KB

english, 2012

Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes

Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 347 KB

english, 2008

On the Number of Two-Dimensional Threshold Functions

Alekseyev, Max A.

Journal:

SIAM Journal on Discrete Mathematics

Année:

2010

Langue:

english

Fichier:

PDF, 234 KB

english, 2010

Scaffold assembly based on genome rearrangement analysis

Aganezov, Sergey, Sitdykova, Nadia, Alekseyev, Max A.

Journal:

Computational Biology and Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2015

On the Intersections of Fibonacci, Pell, and Lucas Numbers

Alekseyev, Max A.

Journal:

Integers

Année:

2011

Langue:

english

Fichier:

PDF, 259 KB

english, 2011

Are There Rearrangement Hotspots in the Human Genome?

Alekseyev, Max A., Pevzner, Pavel A.

Journal:

PLoS Computational Biology

Année:

2007

Langue:

english

Fichier:

PDF, 290 KB

english, 2007

[IEEE 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2015.10.15-2015.10.17)] 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Estimation of the true evolutionary distance under the fragile breakage model

Alexeev, Nikita, Alekseyev, Max A.

Année:

2015

Langue:

english

Fichier:

PDF, 78 KB

english, 2015

Transcriptome sequencing based annotation and homologous evidence based scaffolding ofAnguilla japonicadraft genome

Liu, Yu-Chen, Hsu, Sheng-Da, Chou, Chih-Hung, Huang, Wei-Yun, Chen, Yu-Hung, Liu, Chia-Yu, Lyu, Guan-Jay, Huang, Shao-Zhen, Aganezov, Sergey, Alekseyev, Max A., Hsiao, Chung-Der, Huang, Hsien-Da

Journal:

BMC Genomics

Année:

2016

Langue:

english

Fichier:

PDF, 10.51 MB

english, 2016

On the Minimal Teaching Sets of Two-Dimensional Threshold Functions

Alekseyev, Max A., Basova, Marina G., Zolotykh, Nikolai Yu.

Journal:

SIAM Journal on Discrete Mathematics

Année:

2015

Langue:

english

Fichier:

PDF, 144 KB

english, 2015

[IEEE 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Atlanta, GA, USA (2016.10.13-2016.10.15)] 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - CAMSA: A tool for comparative analysis and merging of scaffold assemblies

Aganezov, Sergey, Alekseyev, Max A.

Année:

2016

Langue:

english

Fichier:

PDF, 25 KB

english, 2016

Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs

Alexeev, Nikita, Pologova, Anna, Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2017

Langue:

english

Fichier:

PDF, 367 KB

english, 2017

Comparative genomics meets topology: a novel view on genome median and halving problems

Alexeev, Nikita, Avdeyev, Pavel, Alekseyev, Max A.

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 750 KB

english, 2016

Estimation of the true evolutionary distance under the fragile breakage model

Nikita Alexeev,Max A. Alekseyev

Journal:

BMC Genomics

Année:

2017

Langue:

english

Fichier:

PDF, 486 KB

english, 2017

[IEEE 2017 IEEE 7th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Orlando, FL, USA (2017.10.19-2017.10.21)] 2017 IEEE 7th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - On problem of orienting ordered scaffolds

Aganezov, Sergey, Alekseyev, Max A.

Année:

2017

Langue:

english

Fichier:

PDF, 177 KB

english, 2017

CAMSA: a tool for comparative analysis and merging of scaffold assemblies

Aganezov, Sergey S., Alekseyev, Max A.

Journal:

BMC Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 1.35 MB

english, 2017

Computing solutions to the congruence

Alekseyev, Max A., Grau, José María, Oller-Marcén, Antonio M.

Journal:

Discrete Applied Mathematics

Année:

2018

Langue:

english

Fichier:

PDF, 352 KB

english, 2018

Implicit Transpositions in DCJ Scenarios

Avdeyev, Pavel, Jiang, Shuai, Alekseyev, Max A.

Journal:

Frontiers in Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 606 KB

english, 2017

Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters

Alexeev, Nikita, Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2018

Fichier:

PDF, 617 KB

2018

Combinatorial Scoring of Phylogenetic Trees and Networks Based on Homoplasy-Free Characters

Alexeev, Nikita, Alekseyev, Max A.

Journal:

Journal of Computational Biology

Année:

2018

Langue:

english

Fichier:

PDF, 617 KB

english, 2018

[ACM Press the 2018 ACM International Conference - Washington, DC, USA (2018.08.29-2018.09.01)] Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '18 - A Rapid Exact Solution for the Guided Genome Halving Problem

Nekhai, Anton, Atamanova, Maria, Avdeyev, Pavel, Alekseyev, Max A.

Année:

2018

Langue:

english

Fichier:

PDF, 810 KB

english, 2018

[ACM Press the 2018 ACM International Conference - Washington, DC, USA (2018.08.29-2018.09.01)] Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '18 - Implicit Transpositions in DCJ Scenarios

Avdeyev, Pavel, Jiang, Shuai, Alekseyev, Max

Année:

2018

Langue:

english

Fichier:

PDF, 962 KB

english, 2018

Linearization of Median Genomes Under the Double-Cut-and-Join-Indel Model

Avdeyev, Pavel, Jiang, Shuai, Alekseyev, Max A

Journal:

Evolutionary Bioinformatics

Année:

2019

Langue:

english

Fichier:

PDF, 517 KB

english, 2019

A Unified ILP Framework for Core Ancestral Genome Reconstruction Problems

Avdeyev, Pavel, Alexeev, Nikita, Rong, Yongwu, Alekseyev, Max A, Valencia, Alfonso

Journal:

Bioinformatics

Année:

2020

Fichier:

PDF, 465 KB

2020

[Lecture Notes in Computer Science] Mathematical and Computational Oncology Volume 12508 (Second International Symposium, ISMCO 2020, San Diego, CA, USA, October 8â10, 2020, Proceedings) ||

Bebis, George, Alekseyev, Max, Cho, Heyrim, Gevertz, Jana, Rodriguez Martinez, Maria

Année:

2020

Fichier:

PDF, 12.55 MB

2020